Disease: Primary malignant neoplasm
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs629367
MIR100HG ; MIRLET7A2
0.776 0.200 11 122146306 intron variant C/A snv 0.88 11
rs2494752
AKT1
0.790 0.120 14 104797271 upstream gene variant A/G snv 0.85 10
rs1570360
VEGFA
0.641 0.680 6 43770093 upstream gene variant A/G snv 0.76 38
rs1800795
IL6-AS1 ; IL6 ; STEAP1B
0.494 0.840 7 22727026 intron variant C/G snv 0.71 140
rs2910164
MIR3142HG ; MIR146A
0.447 0.880 5 160485411 mature miRNA variant C/G snv 0.71; 4.1E-06 0.70 193
rs373572
RAD18
0.882 0.120 3 8913705 missense variant C/T snv 0.68 0.70 6
rs1800469
B9D2 ; TGFB1
0.547 0.760 19 41354391 intron variant A/G snv 0.69 78
rs3743073
CHRNA3
0.807 0.120 15 78617197 intron variant G/T snv 0.61 11
rs2981582
FGFR2
0.695 0.360 10 121592803 intron variant A/G snv 0.58 21
rs1360485
HMGB1
0.742 0.320 13 30457747 3 prime UTR variant C/T snv 0.58 16
rs920778
HOTAIR
0.633 0.480 12 53966448 intron variant G/A snv 0.57 36
rs172378
C1QA
0.790 0.240 1 22638945 synonymous variant A/G snv 0.49 0.51 11
rs931127
SIPA1 ; PCNX3
0.790 0.160 11 65637829 upstream gene variant G/A snv 0.49 12
rs3834129
CASP8
0.627 0.560 2 201232809 upstream gene variant AGTAAG/- del 0.48 38
rs712
KRAS
0.677 0.360 12 25209618 3 prime UTR variant A/C snv 0.46 24
rs5443
CDCA3 ; GNB3
0.532 0.760 12 6845711 synonymous variant C/T snv 0.36 0.44 106
rs13387042
LOC105373874 ; LOC101928278
0.732 0.280 2 217041109 intergenic variant A/G snv 0.44 16
rs1800896
IL19 ; IL10
0.507 0.800 1 206773552 intron variant T/C snv 0.41 113
rs12826786 0.683 0.480 12 53961717 upstream gene variant C/T snv 0.38 26
rs895819
MIR23A ; LOC284454 ; MIR27A ; MIR24-2
0.623 0.560 19 13836478 non coding transcript exon variant T/A;C;G snv 0.34 0.38 46
rs2555639 0.851 0.080 4 174540379 non coding transcript exon variant T/C snv 0.38 7
rs6983267
PCAT1 ; CCAT2 ; CASC8 ; POU5F1B
0.578 0.440 8 127401060 non coding transcript exon variant G/T snv 0.37 62
rs17576
MMP9
0.557 0.760 20 46011586 missense variant A/G snv 0.39 0.36 73
rs11614913
HOXC6 ; MIR196A2
0.512 0.760 12 53991815 mature miRNA variant C/T snv 0.39 0.34 111
rs861539
KLC1 ; XRCC3
0.519 0.680 14 103699416 missense variant G/A snv 0.29 0.30 104